rs31788687 SNP Detail

Summary

• ID
  rs31788687
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36928996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTGCAT TCGTTGGGGC
  TTAAATAAAG TTAGAAGGTC CTCTTCCAGG CCCTCCCGTG CCTGTGGTTC GGAGGCTCAA
  GTTTATTCTC TGGGCCTGCT TGTAAGGTCA TTCACAATGA AGTGTAAAGA GGGACTTTCC
  CTAAAGCAAG TCATGTGAAG TTTGTCTGTT TTGTTAATTG AGACATTAAT TAGACATCAT
  M
  TAATTTTACC TAGAGATTTG AGTTTCTTTC CTGAAAACAG TAAGATCCTT AGAAACCAGA
  TTGACCCATG TGCTGTTTCT TCCCATTTGT CAGCTACTAC TGCAATGTCT GTGACTGTGT
  GGTGAAAGAC TCCATTAACT TCCTGGACCA CATTAATGGA AAGAAACGTA AGGCATGGAG
  GTAGTTGGTG GCTGGAGCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49276052	NES12715263	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31788687					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276052	NES12715263	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36928996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	1624 bp distal
Rr405606	regulatory region 405606	1961 bp downstream
Tssr150675	transcription start site region 150675	815 bp downstream
Tssr150676	transcription start site region 150676	86 bp upstream
Tssr150677	transcription start site region 150677	117 bp upstream
Tssr150678	transcription start site region 150678	577 bp upstream
Zmat2	zinc finger, matrin type 2	Intron