rs31788689 SNP Detail

Summary

• ID
  rs31788689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36928572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCACTCGG TCCTATTTCT
  AGGAGGGGTG GTTCTCTGGG CTTCTTCCTA TTGGTACTGT AATACTTCCC TGATATCTTC
  AGGGGGGCTA TATAGTCTGT TAGAAGACCT GAAGGCTCGG GGTGGGTTTT AGGTGGAGCT
  GTTAACTATA GTTTTTGTGC ACCAAGATTG TGACCTATCG AAGAGTTTCA CGGACCTTGT
  Y
  ACCCTTTGCC ACCATTCCTT AAAGTCTGTC AAAGTTACAA CTTACATCAG GAGACTCAGA
  CAGATAGCAA TCCACTGTTG TGATTCCTTT GCTGTGTACA TTAAATAGTT AGCAGCATAA
  CATAATAATA GCTCATAGTT TCTGTGGGCA AGGAATTGAG GGGTGGTCAC CTTGGAGGTT
  CTGGACCTGG GTCTCTAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49276054	NES12715261	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31788689					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276054	NES12715261	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36928572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	1200 bp distal
Rr405606	regulatory region 405606	1537 bp downstream
Rr536210	regulatory region 536210	1633 bp distal
Tssr150673	transcription start site region 150673	1670 bp downstream
Tssr150674	transcription start site region 150674	1582 bp downstream
Tssr150675	transcription start site region 150675	391 bp downstream
Tssr150676	transcription start site region 150676	510 bp upstream
Tssr150677	transcription start site region 150677	541 bp upstream
Tssr150678	transcription start site region 150678	1001 bp upstream
Zmat2	zinc finger, matrin type 2	Intron