rs31788691 SNP Detail

Summary

• ID
  rs31788691
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36927937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACATACGC TACTCGGTGT
  GAGTACCCCT CTTTTGAAAG GGTCACCTCC AGGAAAAATT CAGAACTCCT CAGTTCAACT
  AGACAACACA TAGGAAACAC TGTTTACATT TGCTGGCTTT AAAGGGAGAA AAGCTCTTGA
  GAGTTGGCAG TACCATTGCA AGTCTGAGGC CAGCTTGGTC CACATAGTGA CCAGGCCTAT
  R
  TCTATATAAG TCCAGGCCAA TTAGAGTCTT TCCTAGCCTC TTTGAATTGC TACATAAAGT
  ACCTGTTGTG TCCGTTCTTT GAGGAATTAA AAAGAAAAAA AAAAAAAGCA TGAGTAGTCT
  TCTGAATTTT GGGGTTCATA ATCTTTTTCC TTTCAGGGAA ACCAGTGCAG CCTGTCAAGC
  GGGAGCTTCT GCGGCACAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49276057	NES12715251	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31788691					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276057	NES12715251	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36927937 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	565 bp distal
Rr405606	regulatory region 405606	902 bp downstream
Rr536210	regulatory region 536210	998 bp distal
Tssr150673	transcription start site region 150673	1035 bp downstream
Tssr150674	transcription start site region 150674	947 bp downstream
Tssr150675	transcription start site region 150675	218 bp upstream
Tssr150676	transcription start site region 150676	1145 bp upstream
Tssr150677	transcription start site region 150677	1176 bp upstream
Tssr150678	transcription start site region 150678	1636 bp upstream
Zmat2	zinc finger, matrin type 2	Intron