rs31788739 SNP Detail

Summary

• ID
  rs31788739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79161902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAGTTCCC CATCTGCTCT GCCCCCTTTC TCCACTGTGA
  CCCTTGGAAA AGGGTGTGAA CCTGCACATC AACCAGATTG GGTGGATATG TGAGATGTGC
  R
  CAGGAGACAC ACACACACAC GCACACAGAC ACATGGACAC ACACACGGAC ATGAATATTG
  CTAGAGGCAT GATTTTCATC TGTAAATAGA TTCTAGGTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46069590	mCV25275461	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss145132900	ENSMUSSNP707675	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31788739					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79161902 () rs orientation: forward

Symbol	Name	Function Class
2900037B21Rik	RIKEN cDNA 2900037B21 gene	770 bp upstream
A330074H02Rik	RIKEN cDNA A330074H02 gene	754 bp downstream
Gm72212	predicted gene, 72212	within coordinates
Mir9-3hg	Mir9-3 host gene	within coordinates
Rr649637	regulatory region 649637	1744 bp distal
Rr649638	regulatory region 649638	within coordinates
Rr649639	regulatory region 649639	1282 bp proximal