rs31788970 SNP Detail

Summary

• ID
  rs31788970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139072971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGC TTTTTGACCA AGGCCTGCCA
  R
  CCACTGGGCA GAGACAGGCG GTGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45571819	mCV24062613	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss147670815	ENSMUSSNP7148553	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		G
ss321381227	CHEV_4_138901575	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31788970					SNP	A	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139072971 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3-ps	cyclin D3, pseudogene	within coordinates
Cpgi15166	CpG island 15166	117 bp proximal
Gm70501	predicted gene, 70501	1309 bp downstream
Mrto4	mRNA turnover 4, ribosome maturation factor	1780 bp downstream
Rr603197	regulatory region 603197	1517 bp distal
Rr603198	regulatory region 603198	48 bp proximal
Tssr44225	transcription start site region 44225	335 bp downstream