rs31789640 SNP Detail

Summary

• ID
  rs31789640
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19306194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCTGGCA GGCCTTGCGC
  CCTATTCCCT CCGCCTTGAG AAAAAGTGTT TGATTACATT CCTAAAGCTA GCCACCAAGG
  TCTACTCCCT TATTTGGATA CTTCCTCCTG AGGCTGAATA CCAAGGTAGA ATTATCACAG
  TATTGAAGTC CAGCAACCAA AAGCCCCCTT TGGCCCACCT AATTAACACA CTTATTTAAA
  M
  TTAAACACCT CACCCTAACA CAGGGTTTCT CCTTGTGTCT TTATAAATTG CCATTTTTCT
  ATGGGTCAAG TCTGTCTCCT CTTTATCCAT TGGCAGTCCT TTGTTCCTCT GGGATACTCC
  TCCTCCTTCT CCCTTGTTCC CTTCCCCATC TCCCTCATTC TCTATTTCCT GTCTTTGTCT
  CTAATTCCCT GTTCTCTGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46068375	mCV25052815	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss148479050	ENSMUSSNP6222031	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31789640					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19306194 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	714 bp proximal
Gemin7	gem nuclear organelle associated protein 7	within coordinates
Rr380485	regulatory region 380485	within coordinates
Rr643192	regulatory region 643192	1201 bp distal
Rr643193	regulatory region 643193	267 bp proximal
Rr643194	regulatory region 643194	689 bp proximal
Rr643195	regulatory region 643195	1368 bp proximal
Tssr70933	transcription start site region 70933	1088 bp downstream
Tssr70934	transcription start site region 70934	1103 bp downstream
Tssr70935	transcription start site region 70935	1110 bp downstream
Tssr70936	transcription start site region 70936	1524 bp downstream