rs31789670 SNP Detail

Summary

• ID
  rs31789670
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93069291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGAGGCC AGAACCTTTA
  CCCACTGAGC ATCTATCTCA ACGGCACCCA CAGTGGATTC AATGGATGGT AACTACTCTG
  AGATAGCTAG AAAGACTAGG AAATCCATGG GAGCATGCAA AATGTCAAAG CAAAGAGAGG
  GGAGAACACA CACGCACCTA CCCATATACA GCACAGTGTT TTGTCAAAGG GTAAGTGTGA
  R
  CTTTAGACTC TATTATCAAG TTACCCCCAG CCACCTCAGG AAAGATAATT CCAGGGGGGA
  AAAAAGGCAG GGATCAATGT GGTATAAATA CACTTGCTGT GTTTTGGAAA AGCTAAGTCT
  TTCTTTCCTT TCCTTTTCTT TTCCTTTCTT TTCTTCTCTT CTCTTCTCTT CTTTCTTTTT
  TTGCACAAGT GTTTGTAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49775297	NES12388207	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31789670					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49775297	NES12388207	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93069291 () rs orientation: forward

Symbol	Name	Function Class
Gm6987	predicted pseudogene 6987	1059 bp downstream
Tssr161483	transcription start site region 161483	1863 bp downstream