rs31789671 SNP Detail

Summary

• ID
  rs31789671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93066336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGATAGC AGCAGAAATG
  GTGCTTAAAG TCATTACTAA ACTGATGTCA CAGTTGGCTC CAGACCAGTT TGTTAAAGCT
  GAAGAAAAGG TGTGGGGGGA AGGGAGGAAA GGAATGAACT GGTGAATCAT TAATTCCTTT
  TGTATCCATT GTAATAACAT CAGCTGTGAT GAAGCCATCT GGCTCCCGGT GGATGGAATG
  Y
  ACATTTCTAT TGAATTCCAC ATTATTCCAC TCTAACGTTT ACCCTGACTA ATGCTGACTA
  CTGGGGAACT GCTCCAGTCC CAAGCACTTT AGTTCTCTGC AGTGACTTTG TTTTCTTGTC
  TTCGCTCCCA GGGTCCAAAG AGAGGAGCTG TGGCTTCCAT TTGCTGGCTG GACTTCCAGA
  GCGCCTTTCT TTGCCCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49775298	NES12388252	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31789671					SNP	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49775298	NES12388252	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93066336 () rs orientation: forward

Symbol	Name	Function Class
Gm6987	predicted pseudogene 6987	1130 bp upstream
Rr692410	regulatory region 692410	within coordinates
Tssr161483	transcription start site region 161483	1082 bp upstream