rs31789672 SNP Detail

Summary

• ID
  rs31789672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93065863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGTTATCA CCTTAGTAAA
  GCAGTCTGCC TTGCAACTGA AACTCCTCAC CCTGATTAAC CAGTAGGAGT GTGTGGGAGA
  GAGTGTGCTG GATCAGAAAA GGGCAACTCT AAAAGCAAAT GCCTGGCCAA GGTGACGCCT
  GTCCCCTTCA CATGGGGAAA ACCATTTCTG TGTAATGCCT GCCTCAGGTA CCCATAGGTA
  Y
  GTCAGGACTT TGACTGGGAC ATGATGCCAA TTCAAAGTGT CACATAGTAG GAAGATGGGG
  AGAAATCTCA ACTCGGTTTC TATTCTTTAA TAGAAAGCAA TACTGTAGTT TAAATTAGCA
  AGGCACTGCT GAACCCTTAT TTAAAGTGTG TTTGCAATGA CATCCTAAGA AAAGAATTTT
  TTTTCTTGTT TAATTGCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49775299	NES12388251	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31789672					SNP	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49775299	NES12388251	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93065863 () rs orientation: forward

Symbol	Name	Function Class
Gm6987	predicted pseudogene 6987	1603 bp upstream
Tssr161483	transcription start site region 161483	1555 bp upstream