rs31789854 SNP Detail

Summary

• ID
  rs31789854
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36926733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAAAACAA AACAAAGAAA CCCCTAGAAA TCAGGTAAAG
  TTGGTTAGAT CATGGAGCAC TATTTTCAAA ACTCTGATTC TTTGCATAAT AGAAGAGATG
  M
  GCTATTCTTC TGGGCTTGTT TTTAAAGCCA GAGAGAAAAA CGTTGGCCCG TGCCCTTACT
  TCCGTGTAGC TTCACACTCC CTTTGCGCCT GCGCCATCTC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49276063	NES12715243	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31789854					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276063	NES12715243	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36926733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	54 bp proximal
Hars2	histidyl-tRNA synthetase 2	1118 bp downstream
Rr405606	regulatory region 405606	1 bp upstream
Rr536210	regulatory region 536210	within coordinates
Tssr150673	transcription start site region 150673	152 bp upstream
Tssr150674	transcription start site region 150674	238 bp upstream
Tssr150675	transcription start site region 150675	1422 bp upstream
Zmat2	zinc finger, matrin type 2	243 bp upstream