rs31790087 SNP Detail

Summary

• ID
  rs31790087
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18915115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCTATCA ACCGTCATCT
  ACCCCTCACC CTATACAAAG AGTCTTGTGT CTAGATTCCT TGGTCCCGGC AATGGGACTC
  AGTGACACCT GACGCCTGCA GGGGTCAGCC GCGGGGGGCG GGGCAGGGGC GGTGGCGCGG
  GCGACTCCCA GGGCCGGAAG CGGCGGGGCC GGTCCGGGCT CCACCCCGGA CCCGAAGCTC
  M
  GCCAGCAGCC GCCATGAGTA GTTTTGGAAT TGGGTGAGAC CCTCTTTCAG CACCCCTCCT
  CCCTCCTCCT GCCCTTCTCG CCTCAGGAAG AGAAGGTGGA GACACGCCCC TTCCTCTGAA
  CTTTTCATCG TCTTCCTGGC TGCTTGAAGT TTGGGGTGTT GCTGGGTAGG GAGGGAAGGA
  GCGCCGGGGA GCGTTTTGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46068571	mCV22832427	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
ss148469633	ENSMUSSNP205346	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31790087					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18915115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18452	CpG island 18452	1259 bp distal
Cpgi18453	CpG island 18453	within coordinates
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Mir330	microRNA 330	275 bp upstream
Rr643019	regulatory region 643019	1852 bp distal
Rr643020	regulatory region 643020	within coordinates
Rr643021	regulatory region 643021	25 bp proximal
Tssr64797	transcription start site region 64797	within coordinates
Tssr64798	transcription start site region 64798	21 bp upstream
Tssr64799	transcription start site region 64799	103 bp upstream
Tssr64800	transcription start site region 64800	217 bp upstream