rs31790773 SNP Detail

Summary

• ID
  rs31790773
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180470184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGATTGTAT CATTTTTATG ACAAATAAAG TAGTGGTTTT
  GTTTTTTAAC CATTTGGTGT GCCCCAACAG GAAGTCAGGT CAGAGAAACC CGTTTCAAAA
  K
  CAAAGAAAAA ACTCGAACTC TGTAAGATGT ATCTGTGGGC AACGCAAATA TGCCTTTAAA
  AGAGAGATAA CTCTTAATTC TGTTTTCTTT GATATCGTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45071194	mCV22719639	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	T
ss146384514	ENSMUSSNP915109	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31790773					SNP	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180470184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1114	CpG island 1114	519 bp distal
Lin9	lin-9 DREAM MuvB core complex component	within coordinates
Rr29091	regulatory region 29091	within coordinates
Tssr10481	transcription start site region 10481	1913 bp downstream
Tssr10482	transcription start site region 10482	1245 bp downstream