GCCTA CTTCTAGTTA CCAGGTTTGG Y TCACTGGGAC ATGTGCCCAG TTAGG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss49276167 | NES12716310 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | T | C | C | C | C | C | ||
ss146951427 | ENSMUSSNP7244644 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | C | ||||||||
ss325584900 | CHEV_18_36926689 | CHEVERUD | SCREENING_POP | f | SNP | T | C | ||||||||
SNP Consensus Information | |||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
SM/J |
||||
rs31790950 | SNP | C | C | T | C | C | C | T | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49276167 | NES12716310 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr18:36900088 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi9876 | CpG island 9876 | 1458 bp distal | ||||||
Dnd1 | DND microRNA-mediated repression inhibitor 1 | 821 bp upstream | ||||||
Gm58557 | predicted gene, 58557 | within coordinates | ||||||
Hars1 | histidyl-tRNA synthetase 1 | within coordinates | ||||||
Rr352751 | regulatory region 352751 | 1487 bp distal | ||||||
Tssr152972 | transcription start site region 152972 | 830 bp upstream | ||||||
Tssr152973 | transcription start site region 152973 | 798 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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