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rs31790950 SNP Detail
Summary
  • ID
    rs31790950
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr18:36900088 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GCCTA CTTCTAGTTA CCAGGTTTGG
    Y
    TCACTGGGAC ATGTGCCCAG TTAGG                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
BTBR T<+> Itpr3/J
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
SM/J
ss49276167 NES12716310 PERLEGEN MM_PANEL2 f SNP C C T C C C C C
ss146951427 ENSMUSSNP7244644 ENSEMBL ENSEMBL_Sanger f SNP C C
ss325584900 CHEV_18_36926689 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
BTBR T<+> Itpr3/J
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
SM/J
rs31790950 SNP C C T C C C T C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49276167 NES12716310 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:36900088 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9876 CpG island 9876 1458 bp distal
Dnd1 DND microRNA-mediated repression inhibitor 1 821 bp upstream
Gm58557 predicted gene, 58557 within coordinates
Hars1 histidyl-tRNA synthetase 1 within coordinates
Rr352751 regulatory region 352751 1487 bp distal
Tssr152972 transcription start site region 152972 830 bp upstream
Tssr152973 transcription start site region 152973 798 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory