rs31791565 SNP Detail

Summary

• ID
  rs31791565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36899513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG ACTCAGTGAG TTTGAGAAGG
  Y
  TTCCTCCTTT TTATACCAGT GTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss49276172	NES12716305	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T		T	T		T
ss146951387	ENSMUSSNP735294	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss325584894	CHEV_18_36926114	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31791565					SNP	T	T	T	T	C	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276172	NES12716305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36899513 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9876	CpG island 9876	883 bp distal
Dnd1	DND microRNA-mediated repression inhibitor 1	246 bp upstream
Hars1	histidyl-tRNA synthetase 1	68 bp downstream
Rr352751	regulatory region 352751	912 bp distal
Tssr152972	transcription start site region 152972	255 bp upstream
Tssr152973	transcription start site region 152973	223 bp upstream