rs31791570 SNP Detail

Summary

• ID
  rs31791570
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36898775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGGACCC TGACGGTGGC
  GGGCTGCCCA CCCAGCCTGG AGGGAAAGGA TTTTGTTGGT TACTGTGGTC CACAAGGATG
  TTTTTAAGCT CCAGGATAAA GCTGGGGGGG GGGGGTAGGG GTGGGGATGG GAGGGAGACC
  ATCTGGAAAT ATTGATACCT TTCTGGCTCC TGGGGGTCGT TACCATAATT GGACTAGACT
  R
  TAAACAACTA GGCTGGCACC ATCCTTGAAG GCCAGTGTGG AAGGGAGGCC AGACAAATAG
  CCACATCTAG TAGAGAGTAC GTCAGGTAAT TTGGGTTTTC TGACTTTGGA TCCTATCTAT
  AAAGAGTGGC CGAGGATGGC CTAGTGTCAC AGGGGCTGGG GCTACTGTAC CTGGGGGTGG
  CCCTCCATAC TTCCTTTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49276177	NES12716295	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31791570					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276177	NES12716295	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36898775 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9876	CpG island 9876	145 bp distal
Dnd1	DND microRNA-mediated repression inhibitor 1	within coordinates
Hars1	histidyl-tRNA synthetase 1	806 bp downstream
Rr352751	regulatory region 352751	174 bp distal
Tssr152972	transcription start site region 152972	470 bp downstream
Tssr152973	transcription start site region 152973	496 bp downstream