rs31791573 SNP Detail

Summary

• ID
  rs31791573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36898135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGTGGTAGT AGCATTAATA TGGCAGTAGT TCAGGAACTC
  CACTTGTGCC TGACTATAGA TTTGGGGGTA TGTTGTTAAG TAGCCAGCCA CCCTTCCGCA
  Y
  CTTCCACCCC TACCTTCTAC CAGGGCCTTT TTGGCCATAG CAGCAGCTCG GTGCGTACTG
  AACTTGAGCA GCGCAATCTG AGAGGGCGCA GACCCAGGGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49276180	NES12716288	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31791573					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276180	NES12716288	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36898135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9876	CpG island 9876	within coordinates
Dnd1	DND microRNA-mediated repression inhibitor 1	within coordinates
Hars1	histidyl-tRNA synthetase 1	1446 bp downstream
Rr352751	regulatory region 352751	within coordinates
Tssr152972	transcription start site region 152972	1110 bp downstream
Tssr152973	transcription start site region 152973	1136 bp downstream
Wdr55	WD repeat domain 55	1374 bp downstream