rs31792174 SNP Detail

Summary

• ID
  rs31792174
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134288713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTGTTTT AAAGTTGTGT
  GTTTTGTTTT AAACAAGTTG TGTGTCTCTG TGTGTCTTTG TGCATGTGTA CCTGCAGAAG
  CCAGAAGGCA CCAGATCTGC CAGACTGGAG TCACAGGTGG TTGTGAGCTG CCTGACGTGG
  GTGCCAGGGA CCCAAATTGA GTCTCTCTTT GAGAGCAGTG TTAACTCCTT AACCACTGAG
  M
  CAGCTCTCTT CTTTTTAAGG TCTAGCTCTT CCCTTCTTCC CAAGATTCCA GGAGCCATTC
  ACCAGCAATT CAATACACGG CTGTTGTTGT TGTTAAAGTT ATAACTAAGA ATCCCCAAAG
  ACATGGGGGA CTTTTGGGAT AGCATTGGAA ATGTAAATGA AATAAATACC TAATAAGAAA
  AATTAAAAAA AAAAAAAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45571742	mCV24789248	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31792174					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134288713 () rs orientation: forward

Symbol	Name	Function Class
Man1c1	mannosidase, alpha, class 1C, member 1	288 bp downstream
Tssr43917	transcription start site region 43917	1922 bp downstream
Tssr43918	transcription start site region 43918	1937 bp downstream
Tssr43919	transcription start site region 43919	1965 bp downstream