rs31792524 SNP Detail

Summary

• ID
  rs31792524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36897460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGATCACC ACCTGGTACC
  AAAAGCGATG CCAGCCAGCA GGCCCTGTTC CTAAACACTT GGTCAGGAAC ACTGGGCTGC
  CTAGCTTCAT CCGTTGACAC AGCAGTTGCA GGGCAGCCCG AGCCCCTTGG GACCCCAGCT
  TCTCCCTGGT CTGGGTTAGT TGGCTGACAT CTGGCCTGAG GAACCGCAGT GAGGGACCTG
  Y
  AAGCTGCTGG CGGAAGTGCT GCTTTAGGTC TGGCTTGAGC CACTCCACAG CCACCTGCTC
  TCCACAGAGG CGTGACTGAC CTGTCAAAAA ATAAAAAAAA AGGCAGAGAG ACAAGGGCAG
  AGTTAAACAC TAGGAGCCGC AAGCACTTAA GACCAGACTT TGAAGTGACT TGCCACAGGC
  TATGTTTAAT GCCTCTACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49276182	NES12716405	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31792524					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276182	NES12716405	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36897460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9876	CpG island 9876	661 bp proximal
Dnd1	DND microRNA-mediated repression inhibitor 1	within coordinates
Gm58557	predicted gene, 58557	1066 bp upstream
Rr352751	regulatory region 352751	540 bp proximal
Tssr152972	transcription start site region 152972	1785 bp downstream
Tssr152973	transcription start site region 152973	1811 bp downstream
Wdr55	WD repeat domain 55	699 bp downstream