rs31792525 SNP Detail

Summary

• ID
  rs31792525
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36897245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGCTTA ACCCATTTAG
  GGTACCTGTA AAAAGAAGGG GTCACTGCTT AACCATAGTA CCTGCTTCAG CCCCAGGAGA
  CCACAAGCTG GTCCTAGGTT CACTCAGTGC CTCCAGCAGC TGTGCGGACA CAGCATCCTT
  GGCCACCTCA TGCCCATCCT GCCAATCAGA GGCCAACACA ACCCAAATGA GGCCACTGAA
  W
  GGCACTGGAT GCCCAGGGAT CACCACCTGG TACCAAAAGC GATGCCAGCC AGCAGGCCCT
  GTTCCTAAAC ACTTGGTCAG GAACACTGGG CTGCCTAGCT TCATCCGTTG ACACAGCAGT
  TGCAGGGCAG CCCGAGCCCC TTGGGACCCC AGCTTCTCCC TGGTCTGGGT TAGTTGGCTG
  ACATCTGGCC TGAGGAACCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49276183	NES12716404	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31792525					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276183	NES12716404	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36897245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9876	CpG island 9876	876 bp proximal
Dnd1	DND microRNA-mediated repression inhibitor 1	within coordinates
Rr352751	regulatory region 352751	755 bp proximal
Tssr152972	transcription start site region 152972	2000 bp downstream
Wdr55	WD repeat domain 55	484 bp downstream