rs31793173 SNP Detail

Summary

• ID
  rs31793173
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48530736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACTTGTG AAGTGGCCTG
  AGAACAACCC TCCAATTCAG CCTCTGCGCT CTAAGCGCAC GACCGGGCAT TTACAAAGGG
  CTTTGGGATC TTGACCCCCT TTTTCAGGCT TCTTTCAATA CACGAAGTAC TGGGGCGAGG
  GAAGGATTCC CTAGGTGCCG AAATCACCGC GATGCCAAAG CGCACCGTAC GCTGCGCTCC
  S
  GGTCCCAGGT ACAGTCCCCA GCAGTAGCCC GCGTCCCGCC CGGCGCAAGC ACTGGCTCCT
  CCTCCCCGCC AACTGCACCG CCCCCGGGGG CAGCCAGACA GCATCTCACG GTTTCCAGGG
  CGACGGCTCC GAGCCAATCA GTAAGCCCGG TGAAGGCCTG CGATTGGCTA GAGGTCCCCA
  AGGCGGGGCC GGACCTTCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss46069448	mCV24996018	ABI	CRAMUS_MOUSE	f	SNP	C	G	C	C
ss149208205	ENSMUSSNP4628201	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31793173					SNP	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48530736 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19137	CpG island 19137			within coordinates
E2f8	E2F transcription factor 8			Intron
				mRNA-UTR
Gm2788	predicted gene 2788			within coordinates
Rr400335	regulatory region 400335			within coordinates
Rr400336	regulatory region 400336			661 bp upstream
Rr646935	regulatory region 646935			1608 bp distal
Rr646936	regulatory region 646936			1101 bp distal
Rr646937	regulatory region 646937			within coordinates
Rr646938	regulatory region 646938			43 bp proximal
Rr646939	regulatory region 646939			397 bp proximal
Rr646940	regulatory region 646940			598 bp proximal
Tssr66768	transcription start site region 66768			344 bp upstream
Tssr66769	transcription start site region 66769			876 bp upstream
Tssr72630	transcription start site region 72630			within coordinates
Tssr72631	transcription start site region 72631			4 bp downstream
Tssr72632	transcription start site region 72632			44 bp downstream
Tssr72633	transcription start site region 72633			616 bp downstream
Tssr72634	transcription start site region 72634			653 bp downstream
Tssr72635	transcription start site region 72635			1363 bp downstream