rs31793487 SNP Detail

Summary

• ID
  rs31793487
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180865205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAT GGGGTTGGCT GGAAATGGCC
  R
  CTTCTGCCAC TGGTGGTTGA CTGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45070734	mCV24573241	ABI	CRAMUS_MOUSE	f	SNP		A					G
ss46723150	NES10691600	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	G		G	G	G	G		A	G	G	A		G
ss146390642	ENSMUSSNP31105	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320160850	CHEV_1_182967771	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31793487					SNP	G	A	A	G	G	G	G	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46723150	NES10691600	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180865205 () rs orientation: forward

Symbol	Name	Function Class
Rr372545	regulatory region 372545	1255 bp downstream
Rr424675	regulatory region 424675	1594 bp distal
Rr424676	regulatory region 424676	82 bp proximal
Rr424677	regulatory region 424677	1853 bp proximal
Tssr10510	transcription start site region 10510	1997 bp downstream