rs31794273 SNP Detail

Summary

• ID
  rs31794273
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180470351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAACTCTTA ATTCTGTTTT CTTTGATATC GTGTATTTCT
  TATATTGTTA AGTCAGAAGT TCAGGTTGCC AGTATTCAGA ATGTTTGTGT TTTAATTTTG
  R
  TTTAGACCAG TGCTAAGTCT CAAAAGAACG TTCTCGATGG TGGATGGAGA TGTCACTTTT
  CTAGTGTGCA GTGAGCAACC GGTAGTCACC TGTGACTAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45071232	mCV22719649	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					A		G
ss60350686	NES15848719	PERLEGEN	MM_PANEL2	f	SNP			A	A	A	A	A		G	G	A	A	G	A	A	A	G
ss146384524	ENSMUSSNP2349344	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31794273					SNP	A	A	A	A	A	A	A	A	G	G	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60350686	NES15848719	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180470351 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1114	CpG island 1114			686 bp distal
Lin9	lin-9 DREAM MuvB core complex component			Intron
				Noncoding-Transcript-Variant
Rr424541	regulatory region 424541			1442 bp distal
Rr424542	regulatory region 424542			412 bp distal
Tssr10482	transcription start site region 10482			1412 bp downstream