rs31795038 SNP Detail

Summary

• ID
  rs31795038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36664110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCACAAA AGGTACCTGG
  GGGGCTTAAT TCCATGCCGA TCTTCACCTT GATTATGGGT CTACCATGCT CCCCAGTTAA
  GCTTGGCATT CACAGGGTGG GATCTAACTT CTTATCAGAC AGTTTGAAGG CGTCCTCAGC
  CGCCACCTCC GTAGCCTCCA GGGGGCGGGG CGTCGCGTAC TCTTAAGTCA AATCTCAGGT
  Y
  GGCTGGAGAC GGTAGCCCAT CTGAGGCTCC CATTCTGCCC AGATTCCCCT CGAAACTGCA
  GGAGGTCACC AGCCTCTCCC GACAGAGTGC TGCCCTAGCA GAAGACAAGC ACCATCACGG
  ACCGCACACA CCCATCCCAG AATTGCAAAG GACAGGCAGG TGAGGGCAGC TGGGTGGGAA
  CAAGGGTTGG GATCCTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49276751	NES12727807	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31795038					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276751	NES12727807	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36664110 () rs orientation: forward

Symbol	Name	Function Class
Rr536162	regulatory region 536162	29 bp distal
Slc4a9	solute carrier family 4, sodium bicarbonate cotransporter, member 9	within coordinates
Tssr150629	transcription start site region 150629	1849 bp downstream
Tssr150630	transcription start site region 150630	1816 bp downstream
Tssr150631	transcription start site region 150631	1806 bp downstream
Tssr150632	transcription start site region 150632	9 bp downstream