rs31795039 SNP Detail

Summary

• ID
  rs31795039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36663561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAAGGAG CTACCATGAG
  ATGGGACGGG CAGCTGCTGT CCTCCTCAGT GACCCGGTGA GTGGGCCAGG GTTTCCTCTG
  TGTGTGTATG TGTGTGCATG TGTGGAACAT ATGTATGGGC TTTGTGTATG TGGTCAGGAA
  TAACAGTGAG GCAGAGTGTG GCTTTGTTTT TGTACCATGG GGGCTGAAGT TTCCAGTTCA
  Y
  TGCTGGCCCA AGGTAGACAC ACATAGGCAC AAATTGAATG AATGGATGGA TGGATGGATG
  GATGGATGGA TGGATGGATT TGTGAGTAAA TCATGATTTG TCTGCTTGTA GCCTGTGTGA
  GGATGGCTTT GAGAAAATAC AGGTGAACAC ACATGGAAGA GTCCTTAATA TGCACTTCCC
  GTCCATTCTG TGACCTTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49276752	NES12727806	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31795039					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276752	NES12727806	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36663561 () rs orientation: forward

Symbol	Name	Function Class
Rr536162	regulatory region 536162	499 bp proximal
Slc4a9	solute carrier family 4, sodium bicarbonate cotransporter, member 9	within coordinates
Tssr150629	transcription start site region 150629	1300 bp downstream
Tssr150630	transcription start site region 150630	1267 bp downstream
Tssr150631	transcription start site region 150631	1257 bp downstream
Tssr150632	transcription start site region 150632	524 bp upstream