rs31795040 SNP Detail

Summary

• ID
  rs31795040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36663067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTGAGT TTCTGCCAAC
  CTCCCCTCCC TAAATAACCT CTCATGCTCT GCCACCCAGC ACCAGAACCC TTTGAGACAG
  AAGCTGCCCG CTGGAGCTGA GGCAGCGGCA GTGTTGGCAG GAGAGCTGGG CTTCCTGGAA
  CAGCCACTAG GGGCCTTCGT AAGACTGCGG AATCCTATAG TGCTGGAGCC TCTTACAGAG
  R
  TGATCTTGCC CAGCAGGTGA GGTGACCCAG TCAGAGCTCT GGGGCCCAGA AGAAGGGCCT
  CTGCTGAGGA GGGTGGGGTC TTTAGATACA GTTCCCCAAG AGTGTCTAGG AAATGCTCCC
  CAGAGGTCAT TCTGCAGAGC TGGTGTGTCC TTGAGCAGAG CTAAGTGTCA AGTTAGAGGC
  TGCTCTTACC AGCAGGCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49276753	NES12727805	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31795040					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276753	NES12727805	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36663067 () rs orientation: forward

Symbol	Name	Function Class
Rr536161	regulatory region 536161	1847 bp distal
Rr536162	regulatory region 536162	993 bp proximal
Slc4a9	solute carrier family 4, sodium bicarbonate cotransporter, member 9	Coding-NonSynonymous
Tssr150628	transcription start site region 150628	1860 bp downstream
Tssr150629	transcription start site region 150629	806 bp downstream
Tssr150630	transcription start site region 150630	773 bp downstream
Tssr150631	transcription start site region 150631	763 bp downstream
Tssr150632	transcription start site region 150632	1018 bp upstream