rs31795042 SNP Detail

Summary

• ID
  rs31795042
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36662173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAGTAAGAC CTTGTCTCAA AACAACAGAG TGTGTGTGTA
  TGGTGGGGGT TGGGGTGGGG CAGGGGGAGG TCACTGACCC TTGTATTTCT GAGACTGATT
  S
  GGGAAAGACA CATGGAATGA GAAGCGGGGA AGGGAGCCAA TGGGAGGACA GAGAGGGCTC
  AGGGGTGGGG GTTGAACGTC ACGTCTGTTC TCCAGAGCAG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49276755	NES12727840	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31795042					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276755	NES12727840	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36662173 () rs orientation: forward

Symbol	Name	Function Class
Rr536161	regulatory region 536161	953 bp distal
Rr536162	regulatory region 536162	1887 bp proximal
Slc4a9	solute carrier family 4, sodium bicarbonate cotransporter, member 9	within coordinates
Tssr150628	transcription start site region 150628	966 bp downstream
Tssr150629	transcription start site region 150629	85 bp upstream
Tssr150630	transcription start site region 150630	103 bp upstream
Tssr150631	transcription start site region 150631	123 bp upstream
Tssr150632	transcription start site region 150632	1912 bp upstream