rs31795043 SNP Detail

Summary

• ID
  rs31795043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36661410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCCAGGA TTTGTGCAAG
  TCTTTCCAGG ATGAAGCTGC CAGGGCAGGG GGATTTTGAA AGCTCTGATG CTCATGAAAA
  TGCTCACTCA GAGGAACCGG ACAGTGGCCT AGGCCCTGGC CCTGGCCTTA ATGGACCCTC
  AGGCATAGAC ATTGGGGAAT CTCAGGTGTC TAAGGACCCT CTGCTCTTCA TTCAACTAAA
  Y
  GAGCTGCTGG GTTGGCCCCA GGCACTAGAG TGGCGAGAGA CAGGCAGGTA AGTGGGTCCT
  GGTTAGCTTC CTTCCTGCCT CAAATTAGGA CTTTTCCTTT GTGTTCTTGC CATGAGACTC
  AGTTTCCTCT ACAATATGAG TTCTCTGAGA CCTAACGAGG AGTGGCTGAC TGCTCAGGGA
  AGGAGGTCCT CTGTATCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49276757	NES12727904	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31795043					SNP	T	T	T	T	C	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276757	NES12727904	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36661410 () rs orientation: forward

Symbol	Name	Function Class
Rr536158	regulatory region 536158	1775 bp distal
Rr536161	regulatory region 536161	190 bp distal
Slc4a9	solute carrier family 4, sodium bicarbonate cotransporter, member 9	within coordinates
Tssr150628	transcription start site region 150628	203 bp downstream
Tssr150629	transcription start site region 150629	848 bp upstream
Tssr150630	transcription start site region 150630	866 bp upstream
Tssr150631	transcription start site region 150631	886 bp upstream