rs31795448 SNP Detail

Summary

• ID
  rs31795448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101016279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTT GGGACTAGGA ACAACCTCCT
  Y
  GGAGGACCAG GTGTCCTTGG TGGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47089569	NES11615899	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31795448					SNP	T	T	C	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47089569	NES11615899	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101016279 () rs orientation: forward

Symbol	Name	Function Class
Arap1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	within coordinates
Rr152366	regulatory region 152366	522 bp proximal
Rr159071	regulatory region 159071	79 bp distal
Rr159072	regulatory region 159072	1322 bp proximal
Rr159073	regulatory region 159073	1721 bp proximal
Rr162868	regulatory region 162868	1064 bp proximal
Rr168321	regulatory region 168321	522 bp proximal
Tssr68230	transcription start site region 68230	479 bp downstream