rs31795954 SNP Detail

Summary

• ID
  rs31795954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36661000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTAGGTT CCACGAGCCT
  AGTTATTTAT TAGTTTCTTG TTTGTCCAAA TGTGTCTCTG TGGCCCCTAG GCCCTAGGTT
  ATATTGTTGA TAACCAAACA GTCCTGGATT CGTGGTGTTA ATATTTGACA CAGGACAACC
  AAGAGCAATG GAATTTAGGG TGGGTATCAG TTACTCCTGT CTGTTTACGC AAAACATAGC
  R
  AGGTCAGACT TGATGCACAC ACACACAAGT TGGGAACTTC TGAAAGGTCT AGGAAAGGCC
  AGATTAGTTT TACAAACAGG TCAGCAGGGG GTCAGAGACC AAATAGAGGA GGAGAAGTCT
  GGCCTTTTCT GGAGCCAACA GGCTTTGCTT TGCTTATGCT GTAGAAATGG GTATAAAAGC
  AGCCAGCCAG AGGGCCCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49276758	NES12727903	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31795954					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276758	NES12727903	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36661000 () rs orientation: forward

Symbol	Name	Function Class
Rr536158	regulatory region 536158	1365 bp distal
Rr536160	regulatory region 536160	1795 bp distal
Rr536161	regulatory region 536161	within coordinates
Slc4a9	solute carrier family 4, sodium bicarbonate cotransporter, member 9	200 bp upstream
Tssr150628	transcription start site region 150628	198 bp upstream
Tssr150629	transcription start site region 150629	1258 bp upstream
Tssr150630	transcription start site region 150630	1276 bp upstream
Tssr150631	transcription start site region 150631	1296 bp upstream