rs31795955 SNP Detail

Summary

• ID
  rs31795955
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36660889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGCAGAA GACTTTAAGA
  TAGAAGTATT GTGTTCTCCA TGACCTGTCT CCACTTTCCA AAATTAGTCC ATTTAACAGG
  TGGGGCCTCT AACCTTCTGT TTCCCTTTCC CTGCCTAGGT TCCACGAGCC TAGTTATTTA
  TTAGTTTCTT GTTTGTCCAA ATGTGTCTCT GTGGCCCCTA GGCCCTAGGT TATATTGTTG
  R
  TAACCAAACA GTCCTGGATT CGTGGTGTTA ATATTTGACA CAGGACAACC AAGAGCAATG
  GAATTTAGGG TGGGTATCAG TTACTCCTGT CTGTTTACGC AAAACATAGC AAGGTCAGAC
  TTGATGCACA CACACACAAG TTGGGAACTT CTGAAAGGTC TAGGAAAGGC CAGATTAGTT
  TTACAAACAG GTCAGCAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	WSB/EiJ
ss49276759	NES12727902	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	WSB/EiJ
rs31795955					SNP	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276759	NES12727902	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36660889 () rs orientation: forward

Symbol	Name	Function Class
Gm50199	predicted gene, 50199	1933 bp downstream
Rr536158	regulatory region 536158	1254 bp distal
Rr536160	regulatory region 536160	1684 bp distal
Rr536161	regulatory region 536161	within coordinates
Slc4a9	solute carrier family 4, sodium bicarbonate cotransporter, member 9	311 bp upstream
Tssr150628	transcription start site region 150628	309 bp upstream
Tssr150629	transcription start site region 150629	1369 bp upstream
Tssr150630	transcription start site region 150630	1387 bp upstream
Tssr150631	transcription start site region 150631	1407 bp upstream