rs31796052 SNP Detail

Summary

• ID
  rs31796052
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164288349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCATCTAG AGCAGCCCTG GGAAAACCGA GACAGAGAGG
  TATTCACATT CCCCGCTTCC AGGTCTGCCA GCTTCTCCAC TTTGGTCAAG GCGCTTGTTC
  W
  CCAGGGCTGT TCCCAGGGCT GTAAAATTAG AGTGATACAT TGTAGCCAGG ATTAAAAGAA
  GGATGTGGGA AAGTGTTAAG CACAGTGCCT GGTGCATAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45072038	mCV25296144	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	T
ss145978979	ENSMUSSNP451174	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31796052					SNP	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164288349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi945	CpG island 945	1704 bp distal
Gm32391	predicted gene, 32391	within coordinates
Gm70485	predicted gene, 70485	within coordinates
Rr422218	regulatory region 422218	1544 bp distal
Rr422219	regulatory region 422219	within coordinates
Rr422220	regulatory region 422220	1105 bp proximal
Rr422221	regulatory region 422221	1259 bp proximal
Tssr14749	transcription start site region 14749	59 bp downstream
Tssr14750	transcription start site region 14750	74 bp downstream