rs31796411 SNP Detail

Summary

• ID
  rs31796411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36738421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATAAATG TGCCTTTTCT
  TATGCTGACA GATAGTTAAC TTGAGTCATA TTTTTGTTTT GTCTGTTTTG TGATATGATC
  TCATGTAACC CAGGCTTTCC CTGAACTTGC TATGTAGTAG ATAAGGATTA CCTTTGAAGC
  TCTGATGCTC CTGCCTTCAC TGTGTGAGTG ATCTAGTCCA GTTGGTAGAA CTAGTATACT
  Y
  GAGGCACCTG AGGCTTCAAG TTTGCTTGAG CAGAGCATCA TGGCAGAAGC ATGAGGTGGA
  GGGTACTCTT TGATTCTTGG CAGATATTAA ATGAATAGAA GCTTTATTTT CATATTCATA
  TTATTATATA TCTATACCTA ATATACTGTT TTATTTGTGT TAAGAAAGGC AGGAGAGATG
  GCTCAGTAGT TAAGAGGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49276672	NES12723813	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31796411					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276672	NES12723813	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36738421 () rs orientation: forward

Symbol	Name	Function Class
Ankhd1	ankyrin repeat and KH domain containing 1	within coordinates
Gm56496	predicted gene, 56496	within coordinates
Rr393542	regulatory region 393542	1450 bp downstream
Tssr5282	transcription start site region 5282	821 bp upstream
Tssr150641	transcription start site region 150641	805 bp upstream
Tssr152942	transcription start site region 152942	723 bp downstream