rs31796519 SNP Detail

Summary

• ID
  rs31796519
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:166079876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTACAAACA TAGGCATGCA GTAAATAGCA GAGCATAATA
  CAAATACATT GATATTTTAA CCCTTTTATG TAGACAAACT TTTTGTAGCG GAAAGCATAC
  R
  TTTTGAAGCC AGGTGACCTG AGGTTAAAGT CTAGCTCTGG CATTCATTGG CTTCTTGATC
  TTAAAGGTCC TAGTGACAAT CTTTATGCTC AAGTTTCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45071660	mCV23451572	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss146015779	ENSMUSSNP531564	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31796519					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166079876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi965	CpG island 965	1491 bp proximal
Gm70596	predicted gene, 70596	600 bp downstream
Ildr2	immunoglobulin-like domain containing receptor 2	1832 bp upstream
Rr422555	regulatory region 422555	1396 bp proximal
Rr422556	regulatory region 422556	1805 bp proximal
Rr422557	regulatory region 422557	1897 bp proximal
Tssr9868	transcription start site region 9868	1743 bp upstream
Tssr9869	transcription start site region 9869	1788 bp upstream
Tssr9870	transcription start site region 9870	1852 bp upstream
Tssr9871	transcription start site region 9871	1879 bp upstream