rs31796590 SNP Detail

Summary

• ID
  rs31796590
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30252853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTC CGGGACGCCT CTTTGACCAG
  S
  GTTTCGGCGA AGGGCTGCTT GAGGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46069891	mCV25394912	ABI	CRAMUS_MOUSE	f	SNP		G						C
ss60990787	NES16136661	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	G	C	C	C	C	C	C	C	C	C	C	C
ss148682310	ENSMUSSNP2098656	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31796590					SNP	C	G	C	G	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990787	NES16136661	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30252853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	777 bp distal
Cpgi18809	CpG island 18809	within coordinates
Cpgi18810	CpG island 18810	798 bp proximal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Mir9769	microRNA 9769	524 bp downstream
Proser3	proline and serine rich 3	1129 bp upstream
Rr400242	regulatory region 400242	936 bp downstream
Tssr65779	transcription start site region 65779	864 bp downstream
Tssr65780	transcription start site region 65780	156 bp downstream
Tssr65781	transcription start site region 65781	119 bp downstream
Tssr65782	transcription start site region 65782	1344 bp upstream
Tssr65783	transcription start site region 65783	1419 bp upstream
Tssr65784	transcription start site region 65784	1443 bp upstream
Tssr65785	transcription start site region 65785	1495 bp upstream
Tssr65786	transcription start site region 65786	1513 bp upstream
Tssr65787	transcription start site region 65787	1607 bp upstream
Tssr71787	transcription start site region 71787	1112 bp upstream
Tssr71788	transcription start site region 71788	1053 bp upstream
Tssr71789	transcription start site region 71789	1237 bp downstream
Tssr71790	transcription start site region 71790	1349 bp downstream