rs31797237 SNP Detail

Summary

• ID
  rs31797237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67198144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTG TTATATACTT GAAAAAAAAT
  Y
  AGAGATGCTT GTGTGTGAAG ACTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45071364	mCV24327310	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss144538408	ENSMUSSNP5104824	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31797237					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67198144 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7208	transcription start site region 7208	1162 bp downstream
Tssr7209	transcription start site region 7209	397 bp upstream
Tssr7210	transcription start site region 7210	436 bp upstream
Tssr7211	transcription start site region 7211	448 bp upstream
Tssr7212	transcription start site region 7212	1906 bp upstream