rs31797264 SNP Detail

Summary

• ID
  rs31797264
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36737174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGTATGG TTTGAGTTTT
  AAAGTACTAA GTTGCCTTTC TCCTTTAGGT TTGCTCTATC CAGGTGTTCT TTTCCCTCTT
  TTCTTCAGTT TTGATATATA CTATGATGTC AGTATTTTCC AGGCTTCCAT TGTCCAACCA
  TTTTATACTT CAGACATGAT TTTTACTAAT AGGTGATTGT TTTAAGTCAT AATTTTCAAA
  S
  ATCTTAAGAG ATAGTCACTT CAATTTAGCT GGCAATGTGT CAGCTAACAT ACTTAAGAGA
  TGTTTTGATT TGGAGAGTGT CATATTTTCA AACTATTTGT GGAGATAATT CTCTTTGTCT
  TCATTGTAGC ATGTTGATTT CAACACTAAA ACAGTACTTG TTAAGATAAA GGAACTGTAG
  AATTTCTTTC ACATGAATTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss49276675	NES12723912	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31797264					SNP	G	G	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276675	NES12723912	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36737174 () rs orientation: forward

Symbol	Name	Function Class
Ankhd1	ankyrin repeat and KH domain containing 1	within coordinates
Gm56496	predicted gene, 56496	within coordinates
Rr393542	regulatory region 393542	203 bp downstream
Tssr152942	transcription start site region 152942	1970 bp downstream