rs31797268 SNP Detail

Summary

• ID
  rs31797268
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36734773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATGATGT TTTCACAAAA
  TAAAACAATT TGACAATTCG CTTTGGGTGG TTGACTTTTT CTGACTGCAT TTAGAAGGAA
  ATTTACTTCT GAAGATGTAG GTGAGTGGTA GAGGGCCTGC CTGACATGTG CAAAGCCCCA
  GGTCCAGCCC CCCAGTATGA AAAAAGGAGA CAAAAGTTGA TACTGTTAAC CATCTTCCTA
  W
  CAATATCACC ATATTCTGTT TTCTCTATCC TTTTGTATTT GACTTTTCAT AATATCAAAT
  TATGTGGCAA GTTCATATGT ATTATAATGC TTAGAGCAAT GGAAAATTAT ACATAATACA
  ATGAATAATT ATAACACTTA CATGTGTGAG ATAAAGTTGG AAATGTAGAG AATTATAGTA
  TTTTCATTTA TTTTGATAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49276680	NES12724081	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31797268					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276680	NES12724081	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36734773 () rs orientation: forward

Symbol	Name	Function Class
Ankhd1	ankyrin repeat and KH domain containing 1	within coordinates
Gm56496	predicted gene, 56496	within coordinates
Rr393542	regulatory region 393542	618 bp upstream