rs31797270 SNP Detail

Summary

• ID
  rs31797270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36734012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTAGGTG CTAATGTGCA
  TGCTACCACA GCTACAGGAG ACACAGCTCT AACCTATGCT TGTGAAAATG GACATACAGA
  TGTTGCAGAT GTTCTACTTC AAGCAGGGGC CCATTTAGTA AGATTTTTAA AATTTCAAAT
  ATTTATGCAT GAATGTTAAT ATATATCATC TAGAACACAT TTGTAATGAT CAGTGATTTA
  Y
  ACATTTTGAA TAAAATAAGG ATTGGTAGTA TGGCATACAA GTCTTGCTGC CAAGACTTGA
  CAAGTTGAGT TTAATCCCCA GAACCCACAT GGTAGAAAAT GATAACCAAC TCTCAAGTTA
  TCTTCAAACC TCATGTGTAC ATGTGGTTGT ACATACACAC TATGATTTTT TAAAATCATT
  TATTTATTTA TTTATTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49276682	NES12724137	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31797270					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276682	NES12724137	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36734012 () rs orientation: forward

Symbol	Name	Function Class
Ankhd1	ankyrin repeat and KH domain containing 1	within coordinates
Gm56496	predicted gene, 56496	within coordinates
Rr393542	regulatory region 393542	1379 bp upstream