rs31799232 SNP Detail

Summary

• ID
  rs31799232
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:125854683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATCAGGT TCTTGTCATA
  CCATTCTCAG CTCTCCTCTG ATGGACCAAA GGGTCTTGGG GCCCGGGCTA GACGAGGGAT
  GGAACTCACC TCTCTGGTGT GGCCCCACCT CCCAGAATAG GAACAGCTCT TCCTCCCTCC
  TAACAGTGCC AGGGAGCTGC AGATCCTGCT CTCTAATTAG ACCTGTCGCC AGCCGGAATC
  W
  CTCCCAGGCT GGGCTGGGGA GGTCATTAGC TGGAGATGGA TAAGTGCTAA GCCAGCCCCA
  CTCTGGAGAT TTACAAGGCA CGGGCGAGGG AGGATTTATA AGGTTTGTTA AATTTCTAAT
  TGAGTTTAGA GTGCTATGCC ACAGTCCCGG TGACCAAGCT GCACAGGCGA GAATTAAAAC
  AAGTGCCCCT ATCCCTCACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45572266	mCV22831419	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
ss147404248	ENSMUSSNP5407432	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31799232					SNP	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:125854683 () rs orientation: forward

Symbol	Name	Function Class
Gm57079	predicted gene, 57079	within coordinates
Rr398483	regulatory region 398483	1882 bp upstream
Rr599574	regulatory region 599574	within coordinates
Rr599575	regulatory region 599575	1725 bp proximal