rs31799323 SNP Detail

Summary

• ID
  rs31799323
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98810666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATTATCC AAGCATCCTG
  TCCTCATTTC CAACACCAAG CTTCTAAAGC TCCCGGTGCT ATGGACACGT GTGATGTGCA
  GCTCATCTTC TCCCACAAAT GGACCTCCCC TCCATGCCAT TCAAAGTACA CTTCCTGGAA
  CTGTCTGCTG AAACGTCAGT CTTCATTATC CCATCGAAAC GACCAAACGG TTACCTTTTT
  W
  AAAAAAATCT ACCATTTACA CTATTTCAAA TCACCAGTTT AATTTCGGTC TTCAGTAGAC
  TGTAGATCAT GGAGTACATT CCCTTCGCTT GTTATCCCTA CCATGCTGAA AATAGTTCAA
  CAGGGCATTA AACAGGGCAA CACACACGGA GGGCACTAAA CAGGGCAACG CACACAGTGG
  GTACTAAACC GAGCAACACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45572845	mCV24976447	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss147092599	ENSMUSSNP6131664	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31799323					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98810666 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14474	CpG island 14474	313 bp proximal
Rr398351	regulatory region 398351	782 bp upstream
Rr595805	regulatory region 595805	110 bp distal
Rr595806	regulatory region 595806	891 bp proximal
Rr595807	regulatory region 595807	1181 bp proximal
Rr595808	regulatory region 595808	1461 bp proximal
Tssr37901	transcription start site region 37901	499 bp upstream
Tssr37902	transcription start site region 37902	1230 bp upstream
Tssr37903	transcription start site region 37903	1295 bp upstream
Tssr37904	transcription start site region 37904	1322 bp upstream
Tssr37905	transcription start site region 37905	1386 bp upstream
Tssr37906	transcription start site region 37906	1416 bp upstream
Tssr37907	transcription start site region 37907	1479 bp upstream
Usp1	ubiquitin specific peptidase 1	1381 bp upstream