rs31799466 SNP Detail

Summary

• ID
  rs31799466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11702714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTA TTTTAAATTA TGTGCCATTA
  Y
  CCCATCCCCC AATGTGAGAT TCTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45572443	mCV23761826	ABI	CRAMUS_MOUSE	f	SNP		T	C
ss146016523	ENSMUSSNP1895824	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31799466					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11702714 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14039	CpG island 14039	1336 bp proximal
Gem	GTP binding protein overexpressed in skeletal muscle	1743 bp upstream
Gm69323	predicted gene, 69323	472 bp downstream
Rr398169	regulatory region 398169	1504 bp upstream
Rr588973	regulatory region 588973	1253 bp proximal
Rr588974	regulatory region 588974	1635 bp proximal
Rr588975	regulatory region 588975	1726 bp proximal
Rr588976	regulatory region 588976	1754 bp proximal
Tssr36493	transcription start site region 36493	1725 bp upstream