rs31799869 SNP Detail

Summary

• ID
  rs31799869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:105282223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTTC TGCTCCTACC CAGCAGCCCT
  Y
  TCTGCTACCT GCCAGTAATT TAGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45072080	mCV25150502	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss145082593	ENSMUSSNP374070	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss319882706	CHEV_1_107251075	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31799869					SNP	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105282223 () rs orientation: forward

Symbol	Name	Function Class
Cpgi626	CpG island 626	1288 bp proximal
Gm17634	predicted gene, 17634	1509 bp upstream
Rnf152	ring finger protein 152	within coordinates
Rr416387	regulatory region 416387	1019 bp proximal
Rr416388	regulatory region 416388	1520 bp proximal
Rr416389	regulatory region 416389	1529 bp proximal
Tssr13126	transcription start site region 13126	1982 bp downstream