rs31800452 SNP Detail

Summary

• ID
  rs31800452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63327835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG ATCAAACATA CTTATTTAAC
  Y
  CAATACAACT AGTCTATTAC CTCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45572779	mCV24478861	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss146443729	ENSMUSSNP4437315	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31800452					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63327835 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14370	CpG island 14370	275 bp proximal
Gm57078	predicted gene, 57078	within coordinates
Rr398307	regulatory region 398307	518 bp upstream
Rr398308	regulatory region 398308	1039 bp upstream
Rr593544	regulatory region 593544	371 bp distal
Rr593545	regulatory region 593545	1062 bp proximal
Tssr37559	transcription start site region 37559	7 bp upstream
Tssr42046	transcription start site region 42046	395 bp downstream
Tssr42047	transcription start site region 42047	412 bp downstream
Tssr42048	transcription start site region 42048	590 bp downstream
Tssr42049	transcription start site region 42049	616 bp downstream
Tssr42050	transcription start site region 42050	1085 bp downstream
Tssr42051	transcription start site region 42051	1107 bp downstream
Tssr42052	transcription start site region 42052	1147 bp downstream