rs31800796 SNP Detail

Summary

• ID
  rs31800796
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53764857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATGTTT TCATTAGCTA
  GCTTTAAAAA ATGTTCCTTA GATATAGATA TAGTTTATAT CTCTAGGTTG TGGTTTACTT
  ATATTGTAGT ACCTGAATAT ATTTATGTGC ATTATAAGTA GATAGATATA CATGCACACA
  CAATATCAGT TCTTTTGTTT CTATTCAGTG ATGGTGTTGA TACATTCTGA AAATATTTCA
  R
  ACTTTTTCTA CATTTTTAAC TGAGAACATA GAGACAAATA GAGAATACAC AAAGAAAAAT
  TATAATTTTC CCTCTTTCAA CTGTGGCAAA TGAGATGATT AGTAACATTT CCTGTTTTAT
  GTTCCTGATC CTTCCTGATA ATTATCTTCT CCCAGTTGTC TGAGTGTAGA CATGTGCACA
  CTTACATCTC TACAAGTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss47090846	NES11245744	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	G	A	A
ss137758444	ENSMUSSNP4026171	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs31800796					SNP	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47090846	NES11245744	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53764857 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	1744 bp proximal
Rr263732	regulatory region 263732	1831 bp proximal