rs31801394 SNP Detail

Summary

• ID
  rs31801394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:131230890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTCTTAC ATCGTGTAGA
  AATGCATTTT GAGGCGTTCA AGCTTCCAGC TGGTATCCTG GAAGCAGACA TCACTCCCTT
  GGCAGCCAAC ATGGAAAACA CAGAGGCAGG CCCAGGGAAC AGCTTTGGAC CATGTGGCAA
  GAATTTCCCA TCGATTCCCC AAAGCAGGCA GGCTATTGCT CCCGCGCTCG CTGGCTGTTT
  R
  TCATTTGGAA CCTTCATGCA ACAGAACCTT GCCTACACAC TCCCTGTCTA ATTCATCTTC
  ACTCATATAT TTTACCATTA CAGATAGCCT TCCCCTTAAG CTTGTCTATT TACTAGCTGG
  TGTGACAGAT GACAGCGACG CCGAGCCATG CTAGATGGCA TTTGTGTGGC TCTGGTGCCA
  GAAGCATTCT AAGCCCGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46069772	mCV24302234	ABI	CRAMUS_MOUSE	f	SNP		G					A		A
ss61066485	NES16063271	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	G	A		G	A	A	G	A	A	G
ss145934722	ENSMUSSNP5805613	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31801394					SNP	G	G	A	A	G	A	A	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61066485	NES16063271	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:131230890 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19823	CpG island 19823	639 bp distal
Rr656477	regulatory region 656477	within coordinates