rs31801588 SNP Detail

Summary

• ID
  rs31801588
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:89787307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTTTAAC ACAACTGCCC
  TGCAGGAAAG AAATGCAAAC ATTAAATCAG CTTATTAACT CCATTACAGT GCATTCAGTC
  TCTATTTAAG ATTTAATTTA TCTAGAGTTA ATCTCACGAG TACTTAATTA GTAGCTGCCA
  ACAAATCAAG GTTAGAAAAA AATGAGGGAA CCAAATAAAG AGAAAAATTA CCTCTACTTG
  W
  CCGAATTGCA CTTAAATGGT TTGTTCCTTT AGAGAAATAT TAAGTTTCAG TGAGAACTAA
  GCTCACATAA AAAACATCCC AGAGTTAGAT CAATCTGTCC AACTTGTGTA AATAGTATTC
  ATGCATGGGC ATGTAGTTAG TTTGGGAAAA CAAAATATCT ATTGAAGAGC AAATTTCACA
  GAAATAATTT GCAGGTTTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49777164	NES12388281	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31801588					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49777164	NES12388281	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:89787307 () rs orientation: forward

Symbol	Name	Function Class
Fth1-ps	ferritin heavy polypeptide 1, pseudogene	845 bp downstream
Tssr161463	transcription start site region 161463	957 bp upstream
Tssr161464	transcription start site region 161464	1019 bp upstream
Tssr161465	transcription start site region 161465	1034 bp upstream
Tssr161466	transcription start site region 161466	1069 bp upstream
Tssr161467	transcription start site region 161467	1156 bp upstream
Tssr161468	transcription start site region 161468	1229 bp upstream
Tssr163758	transcription start site region 163758	984 bp downstream
Tssr163759	transcription start site region 163759	1097 bp downstream
Tssr163760	transcription start site region 163760	1268 bp downstream
Tssr163761	transcription start site region 163761	1530 bp downstream