rs31801721 SNP Detail

Summary

• ID
  rs31801721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118455204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGGGTCTCC CGAAGTGCTC GTGTCACCCC CGCAGGTCGT
  CGAGCCGCCG GGGAAGAGCC TATGGGATCA GATCTGCGAG GGTAGGCGCC CCGCCGCTGG
  Y
  CGGGCCGGGC GGGACGCGGG CGGGACCCGC CGGGACGCGC GTTCCAAGCC TCTGTGCGCC
  AGGCGGGTGA CGCGCGCGGG CGGAGGAGCC GAGCCTTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46069955	mCV23653587	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss145794238	ENSMUSSNP1948545	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31801721					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118455204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19628	CpG island 19628	within coordinates
Iqck	IQ motif containing K	within coordinates
Knop1	lysine rich nucleolar protein 1	297 bp upstream
Rr654563	regulatory region 654563	379 bp distal
Rr654564	regulatory region 654564	196 bp distal
Rr654565	regulatory region 654565	within coordinates
Tssr68731	transcription start site region 68731	183 bp downstream
Tssr74457	transcription start site region 74457	286 bp upstream
Tssr74458	transcription start site region 74458	21 bp upstream
Tssr74459	transcription start site region 74459	within coordinates
Tssr74460	transcription start site region 74460	3 bp downstream
Tssr74461	transcription start site region 74461	36 bp downstream
Tssr74462	transcription start site region 74462	52 bp downstream
Tssr74463	transcription start site region 74463	380 bp downstream