rs31801834 SNP Detail

Summary

• ID
  rs31801834
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53765315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATCTCA CCCTACTTAC
  TGTGTCTCCT CTCACCCCAC ACATCTTTTT GGTAGTTACA TTAATAAGCG TCTTTCCCAC
  TTACCAGTTT ACATTTATTC TGAAGTCTTT CACTTCTGTA TTTTCTTATG CGAATCATTA
  CACAGTACCT CATCTTTTAT TATCTCCCAC TTGCATTGAA AATAGTATTC CATGGTAGAA
  W
  CTCTAGCCAG GGATTATCAT TCTGTCCACT TACTACACAT TTTGAATTTG TATACCTAAC
  ACTCAGCCCA CACTCAGCAT TCTCATCTCC CTCCTCCTCT CCCAGTCTCT TCTCCCTCCC
  CATTCCCTCC TTCTGGTATA TTGGTGGTGG TTGTGGTGGT GGTGGTTTTT TCTGTAAGTT
  CTTTCCTCTA TCCCATTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47090855	NES11245747	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31801834					SNP	A	A	A	A	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47090855	NES11245747	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53765315 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	1286 bp proximal
Rr263732	regulatory region 263732	1373 bp proximal