rs31801836 SNP Detail

Summary

• ID
  rs31801836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53765501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCATGGT AGAAACTCTA
  GCCAGGGATT ATCATTCTGT CCACTTACTA CACATTTTGA ATTTGTATAC CTAACACTCA
  GCCCACACTC AGCATTCTCA TCTCCCTCCT CCTCTCCCAG TCTCTTCTCC CTCCCCATTC
  CCTCCTTCTG GTATATTGGT GGTGGTTGTG GTGGTGGTGG TTTTTTCTGT AAGTTCTTTC
  Y
  TCTATCCCAT TTGTAGTCTT CATCTTTCTC TAGAAGGACA GCATAGGGGG TTTGCAAAAT
  GATGCGTGTG ACCAGTGGGA GACTGCCATC GCTGTTAGGT CAGGGTAAGG GGATGGACTT
  GAGTGGAAAA GCAAGGGACT CCATATGTGA GAGGGACTGG CTTGAGAAAG AACGGGCATT
  TTCATGTGTG TTTTCAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47090858	NES11245748	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	C	T	C	T
ss137758455	ENSMUSSNP3249487	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31801836					SNP	T	C	C	C	T	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47090858	NES11245748	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53765501 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	1100 bp proximal
Rr263732	regulatory region 263732	1187 bp proximal