rs31801842 SNP Detail

Summary

• ID
  rs31801842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53766123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGTATT GGTCAAAGAA
  GATTTAGGAG AACTCTTTGA GCACTGACAC ACCACGATTC ACAGTTCTTC TTTTCTGGAA
  GTTGAAGTGT CTGTAAAGCA GTGTATCAGT TGCCCTTCTC TCAGTGAAAT AATTACCACA
  AAGATACTCA GATCCTAAAG TTCCCTTCTC ATCATGCTGC CCTTCCTTAG TCAGTCTTGG
  Y
  GTCTGCTTTT AAGGATCTCC TTCTTATTCC TCCACAGTCA CCTTCCAGCT CAGCCGCTGT
  TTATTTAACC CAAACACTCT GCCTTGTATG GAACCTTCCA GGATTATGCT TCTTGGGCTG
  CTTACATCAG CTTTGGTCCC AAGGGGACCA TTCTCTCTTG TGATTAAGTC AGTGTGTGTC
  CTCTGTCCCT CTGATGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47090864	NES11245750	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C	C	C	T	C	T	T	C
ss137758470	ENSMUSSNP6359178	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31801842					SNP	T	T	C	T	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47090864	NES11245750	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53766123 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	478 bp proximal
Rr263732	regulatory region 263732	565 bp proximal